This is the quickstart-vignette for phenopype: A phenotyping pipeline for Python, which reproduces the exemplary workflow shown in Figure 2 of Lürig (2021):

Quickstart procedure (Lürig, 2021 [Fig. 2])


  1. Install phenopype: pip install phenopype

  2. Download the quickstart materials.

  3. Use the script quickstart.py to outline the bony armour plates of the stickleback specimen, either by using the low-throughput or high-throughput workflow.

  4. Check the tutorials and the phenopype project gallery to get some inspiration for your own study system.