Quickstart
==========

This is the quickstart-vignette for phenopype: A phenotyping pipeline for Python, which reproduces the exemplary workflow shown in Figure 2 of `Lürig (2021) <https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13771>`_:

.. image:: /_assets/images/luerig_2021_figure2.jpg
   :align: center
   :alt: Quickstart procedure (Lürig, 2021 [Fig. 2])
   
Procedure
---------

1. Install phenopype: :code:`pip install phenopype`
	
2. Download the `quickstart materials <https://github.com/phenopype/phenopype-quickstart/archive/refs/heads/main.zip>`_.

3. Use the script :code:`quickstart.py` to outline the bony armour plates of the stickleback specimen, either by using the low-throughput or high-throughput workflow.

4. Check the `tutorials <https://phenopype.org/docs/tutorials>`_ and the `phenopype project gallery <https://phenopype.org/gallery/>`_ to get some inspiration for your own study system.