Index

A

add_config() (phenopype.main.Project method) add_files() (phenopype.main.Project method)

add_model() (phenopype.main.Project method) add_reference() (phenopype.main.Project method)

B

blur() (in module phenopype.core.preprocessing)

C

check_files() (phenopype.main.Project method) clip_histogram() (in module phenopype.core.preprocessing) collect_results() (phenopype.main.Project method) compute_shape_features() (in module phenopype.core.measurement) compute_texture_features() (in module phenopype.core.measurement)

Container (class in phenopype.utils) contour_to_mask() (in module phenopype.core.segmentation) convert_annotation() (in module phenopype.core.export) copy_tag() (phenopype.main.Project method) create_mask() (in module phenopype.core.preprocessing) create_reference() (in module phenopype.core.preprocessing)

D

decompose_image() (in module phenopype.core.preprocessing) detect_contour() (in module phenopype.core.segmentation) detect_mask() (in module phenopype.core.preprocessing) detect_QRcode() (in module phenopype.core.preprocessing) detect_reference() (in module phenopype.core.preprocessing) detect_skeleton() (in module phenopype.core.measurement) detection_settings() (phenopype.tracking.motion_tracker method)

draw_comment() (in module phenopype.core.visualization) draw_contour() (in module phenopype.core.visualization) draw_landmark() (in module phenopype.core.visualization) draw_mask() (in module phenopype.core.visualization) draw_polyline() (in module phenopype.core.visualization) draw_QRcode() (in module phenopype.core.visualization) draw_reference() (in module phenopype.core.visualization)

E

edit_config() (phenopype.main.Project method) edit_contour() (in module phenopype.core.segmentation)

export_csv() (in module phenopype.core.export) export_training_data() (phenopype.main.Project method) export_zip() (phenopype.main.Project method)

L

load() (phenopype.utils.Container method) load_annotation() (in module phenopype.core.export)

load_image() (in module phenopype.utils) load_template() (in module phenopype.utils)

M

mask_to_contour() (in module phenopype.core.segmentation) module phenopype.core.export phenopype.core.measurement phenopype.core.preprocessing phenopype.core.segmentation phenopype.core.visualization phenopype.utils

morphology() (in module phenopype.core.segmentation) motion_tracker (class in phenopype.tracking)

P

phenopype.core.export module phenopype.core.measurement module phenopype.core.preprocessing module phenopype.core.segmentation module

phenopype.core.visualization module phenopype.utils module print_colours() (in module phenopype.utils) Project (class in phenopype.main) Pype (class in phenopype.main)

R

reset() (phenopype.utils.Container method)

run() (phenopype.utils.Container method) run_tracking() (phenopype.tracking.motion_tracker method)

S

save() (phenopype.utils.Container method) save_annotation() (in module phenopype.core.export) save_canvas() (in module phenopype.core.export) save_image() (in module phenopype.utils)

save_ROI() (in module phenopype.core.export) select_canvas() (in module phenopype.core.visualization) set_landmark() (in module phenopype.core.measurement) set_polyline() (in module phenopype.core.measurement) show_image() (in module phenopype.utils)

T

threshold() (in module phenopype.core.segmentation)

tracking_method (class in phenopype.tracking)

V

video_output() (phenopype.tracking.motion_tracker method)

W

watershed() (in module phenopype.core.segmentation)

write_comment() (in module phenopype.core.preprocessing)